ZC3H13

Protein-coding gene in the species Homo sapiens
ZC3H13
Identifiers
AliasesZC3H13, KIAA0853, zinc finger CCCH-type containing 13, Xio
External IDsOMIM: 616453; MGI: 1914552; GeneCards: ZC3H13; OMA:ZC3H13 - orthologs
Gene location (Human)
Chromosome 13 (human)
Chr.Chromosome 13 (human)[1]
Chromosome 13 (human)
Genomic location for ZC3H13
Genomic location for ZC3H13
Band13q14.13Start45,954,465 bp[1]
End46,052,759 bp[1]
Gene location (Mouse)
Chromosome 14 (mouse)
Chr.Chromosome 14 (mouse)[2]
Chromosome 14 (mouse)
Genomic location for ZC3H13
Genomic location for ZC3H13
Band14|14 D3Start75,521,813 bp[2]
End75,581,866 bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • sural nerve

  • Achilles tendon

  • secondary oocyte

  • tibia

  • corpus callosum

  • testicle

  • optic nerve

  • tail of epididymis

  • right lobe of liver

  • subthalamic nucleus
Top expressed in
  • Rostral migratory stream

  • otic vesicle

  • zygote

  • oocyte

  • primary oocyte

  • secondary oocyte

  • tail of embryo

  • ventricular zone

  • genital tubercle

  • hand
More reference expression data
BioGPS


More reference expression data
Gene ontology
Molecular function
  • protein binding
  • metal ion binding
  • RNA binding
Cellular component
  • nuclear speck
  • nucleus
  • nucleoplasm
  • RNA N6-methyladenosine methyltransferase complex
Biological process
  • mRNA processing
  • multicellular organism development
  • RNA splicing
  • mRNA methylation
  • regulation of stem cell population maintenance
Sources:Amigo / QuickGO
Orthologs
SpeciesHumanMouse
Entrez

23091

67302

Ensembl

ENSG00000123200

ENSMUSG00000022000

UniProt

Q5T200

E9Q784

RefSeq (mRNA)
NM_015070
NM_001076788
NM_001330564
NM_001330565
NM_001330566

NM_001330567
NM_001382206
NM_001382207
NM_001382208
NM_001382209
NM_001382210
NM_001382211
NM_001382212
NM_001382213
NM_001382214

NM_026083
NM_027377
NM_001359875

RefSeq (protein)
NP_001070256
NP_001317493
NP_001317494
NP_001317495
NP_001317496

NP_055885
NP_001369135
NP_001369136
NP_001369137
NP_001369138
NP_001369139
NP_001369140
NP_001369141
NP_001369142
NP_001369143

NP_080359
NP_001346804

Location (UCSC)Chr 13: 45.95 – 46.05 MbChr 14: 75.52 – 75.58 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Zinc finger CCCH domain-containing protein 13 is a protein that in humans is encoded by the ZC3H13 gene.[5][6]


References

  1. ^ a b c GRCh38: Ensembl release 89: ENSG00000123200 – Ensembl, May 2017
  2. ^ a b c GRCm38: Ensembl release 89: ENSMUSG00000022000 – Ensembl, May 2017
  3. ^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^ Nagase T, Ishikawa K, Suyama M, Kikuno R, Hirosawa M, Miyajima N, Tanaka A, Kotani H, Nomura N, Ohara O (May 1999). "Prediction of the coding sequences of unidentified human genes. XII. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro". DNA Res. 5 (6): 355–64. doi:10.1093/dnares/5.6.355. PMID 10048485.
  6. ^ "Entrez Gene: ZC3H13 zinc finger CCCH-type containing 13".

Further reading

  • Wiemann S, Weil B, Wellenreuther R, et al. (2001). "Toward a Catalog of Human Genes and Proteins: Sequencing and Analysis of 500 Novel Complete Protein Coding Human cDNAs". Genome Res. 11 (3): 422–35. doi:10.1101/gr.GR1547R. PMC 311072. PMID 11230166.
  • Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. Bibcode:2002PNAS...9916899M. doi:10.1073/pnas.242603899. PMC 139241. PMID 12477932.
  • Ota T, Suzuki Y, Nishikawa T, et al. (2004). "Complete sequencing and characterization of 21,243 full-length human cDNAs". Nat. Genet. 36 (1): 40–5. doi:10.1038/ng1285. PMID 14702039.
  • Obuse C, Yang H, Nozaki N, et al. (2004). "Proteomics analysis of the centromere complex from HeLa interphase cells: UV-damaged DNA binding protein 1 (DDB-1) is a component of the CEN-complex, while BMI-1 is transiently co-localized with the centromeric region in interphase". Genes Cells. 9 (2): 105–20. doi:10.1111/j.1365-2443.2004.00705.x. PMID 15009096. S2CID 21813024.
  • Dunham A, Matthews LH, Burton J, et al. (2004). "The DNA sequence and analysis of human chromosome 13". Nature. 428 (6982): 522–8. Bibcode:2004Natur.428..522D. doi:10.1038/nature02379. PMC 2665288. PMID 15057823.
  • Brill LM, Salomon AR, Ficarro SB, et al. (2004). "Robust phosphoproteomic profiling of tyrosine phosphorylation sites from human T cells using immobilized metal affinity chromatography and tandem mass spectrometry". Anal. Chem. 76 (10): 2763–72. doi:10.1021/ac035352d. PMID 15144186.
  • Brandenberger R, Wei H, Zhang S, et al. (2005). "Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation". Nat. Biotechnol. 22 (6): 707–16. doi:10.1038/nbt971. PMID 15146197. S2CID 27764390.
  • Beausoleil SA, Jedrychowski M, Schwartz D, et al. (2004). "Large-scale characterization of HeLa cell nuclear phosphoproteins". Proc. Natl. Acad. Sci. U.S.A. 101 (33): 12130–5. Bibcode:2004PNAS..10112130B. doi:10.1073/pnas.0404720101. PMC 514446. PMID 15302935.
  • Beausoleil SA, Villén J, Gerber SA, et al. (2006). "A probability-based approach for high-throughput protein phosphorylation analysis and site localization". Nat. Biotechnol. 24 (10): 1285–92. doi:10.1038/nbt1240. PMID 16964243. S2CID 14294292.
  • Olsen JV, Blagoev B, Gnad F, et al. (2006). "Global, in vivo, and site-specific phosphorylation dynamics in signaling networks". Cell. 127 (3): 635–48. doi:10.1016/j.cell.2006.09.026. PMID 17081983.


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