Receptor retinoinske kiseline alfa

Receptor retinoinske kiseline, alfa
PDB slika je bazirana na 1dkf.
Dostupne strukture
1dkf​, 1dsz​, 1hra
Identifikatori
Simboli RARA; NR1B1; RAR
Vanjski ID OMIM: 180240 MGI: 97856 HomoloGene: 20262 GeneCards: RARA Gene
Ontologija gena
Molekularna funkcija aktivnost transkripcionog faktora
aktivnost steroidnog hormonskog receptora
aktivnost receptora retinoinske kiseline
aktivnost transkripcionog koaktivatora
vezivanje za proteine
vezivanje cink jona
sekvenca-specifično DNK vezivanje
vezivanje metalnih jona
Celularna komponenta nukleus
Biološki proces transkripcija
regulacija transkripcije, DNK-zavisna
prenos signala
Pregled RNK izražavanja
podaci
Ortolozi
Vrsta Čovek Miš
Entrez 5914 19401
Ensembl ENSG00000131759 ENSMUSG00000037992
UniProt P10276 Q3U3R3
RefSeq (mRNA) NM_001033603 NM_009024
RefSeq (protein) NP_001028775 NP_033050
Lokacija (UCSC) Chr 17:
35.72 - 35.77 Mb
Chr 11:
98.75 - 98.79 Mb
PubMed pretraga [1] [2]

Receptor retinoinske kiseline alfa (RAR-alfa), isto poznat kao NR1B1 (nuklearni receptor potfamilije 1, grupa B, član 1), je nuklearni receptor kodiran genom RARA.

Interakcije

Pokazano je za receptor retinoinske kiseline gama da može da formnira interakciju sa NCOA6,[1][2][3] CLOCK,[4] TADA3L,[5] Cink prst i BTB domen-sadržavajući protein 16,[6] Src,[7][8] Nuklearni receptor srodni 1 protein (NURR1),[9] Mali heterodimer partner (SHP),[10][11] NPAS2,[4] Cyclin D3,[12] Nuklearni receptor korepresor 1,[13][14] BAG1,[15] Nuklearni receptor korepresor 2,[16][17] NRIP1,[18][19][20] Protein promielocitna leukemije[21] i Retinoidni X receptor alfa.[22][23]

Vidi još

  • Receptor retinoinske kiseline
  • Akutna promijelocitna leukemija

Reference

  1. ^ Lee, S K; Jung S Y; et al. (2001). „Two distinct nuclear receptor-interaction domains and CREB-binding protein-dependent transactivation function of activating signal cointegrator-2”. Mol. Endocrinol. United States. 15 (2): 241—54. ISSN 0888-8809. PMID 11158331. 
  2. ^ Lee, S K; Anzick S L; et al. (1999). „A nuclear factor, ASC-2, as a cancer-amplified transcriptional coactivator essential for ligand-dependent transactivation by nuclear receptors in vivo”. J. Biol. Chem. UNITED STATES. 274 (48): 34283—93. ISSN 0021-9258. PMID 10567404. 
  3. ^ Ko, L; Cardona G R; Chin W W (2000). „Thyroid hormone receptor-binding protein, an LXXLL motif-containing protein, functions as a general coactivator”. Proc. Natl. Acad. Sci. U.S.A. UNITED STATES. 97 (11): 6212—7. ISSN 0027-8424. PMID 10823961. 
  4. ^ а б McNamara, P; Seo S B; et al. (2001). „Regulation of CLOCK and MOP4 by nuclear hormone receptors in the vasculature: a humoral mechanism to reset a peripheral clock”. Cell. United States. 105 (7): 877—89. ISSN 0092-8674. PMID 11439184. 
  5. ^ Zeng, Musheng; Kumar Ajay; et al. (2002). „Human papilloma virus 16 E6 oncoprotein inhibits retinoic X receptor-mediated transactivation by targeting human ADA3 coactivator”. J. Biol. Chem. United States. 277 (47): 45611—8. ISSN 0021-9258. PMID 12235159. doi:10.1074/jbc.M208447200. 
  6. ^ Martin; Delmotte; et al. (2003). „PLZF is a negative regulator of retinoic acid receptor transcriptional activity”. Nucl. Recept. 1 (1): 6. PMID 14521715. doi:10.1186/1478-1336-1-6. 
  7. ^ Kim, H J; Yi J Y; et al. (1999). „Activating signal cointegrator 1, a novel transcription coactivator of nuclear receptors, and its cytosolic localization under conditions of serum deprivation”. Mol. Cell. Biol. UNITED STATES. 19 (9): 6323—32. ISSN 0270-7306. PMID 10454579. 
  8. ^ He, Bin; Wilson Elizabeth M (2003). „Electrostatic modulation in steroid receptor recruitment of LXXLL and FXXLF motifs”. Mol. Cell. Biol. United States. 23 (6): 2135—50. ISSN 0270-7306. PMID 12612084. 
  9. ^ Perlmann, T; Jansson L (1995). „A novel pathway for vitamin A signaling mediated by RXR heterodimerization with NGFI-B and NURR1”. Genes Dev. UNITED STATES. 9 (7): 769—82. ISSN 0890-9369. PMID 7705655. 
  10. ^ Seol, W; Choi H S; Moore D D (1996). „An orphan nuclear hormone receptor that lacks a DNA binding domain and heterodimerizes with other receptors”. Science. UNITED STATES. 272 (5266): 1336—9. ISSN 0036-8075. PMID 8650544. 
  11. ^ Seol, W; Hanstein B; et al. (1998). „Inhibition of estrogen receptor action by the orphan receptor SHP (short heterodimer partner)”. Mol. Endocrinol. UNITED STATES. 12 (10): 1551—7. ISSN 0888-8809. PMID 9773978. 
  12. ^ Despouy, Gilles; Bastie Jean-Nöel; et al. (2003). „Cyclin D3 is a cofactor of retinoic acid receptors, modulating their activity in the presence of cellular retinoic acid-binding protein II”. J. Biol. Chem. United States. 278 (8): 6355—62. ISSN 0021-9258. PMID 12482873. doi:10.1074/jbc.M210697200. 
  13. ^ Dowell, P; Ishmael J E; et al. (1999). „Identification of nuclear receptor corepressor as a peroxisome proliferator-activated receptor alpha interacting protein”. J. Biol. Chem. UNITED STATES. 274 (22): 15901—7. ISSN 0021-9258. PMID 10336495. 
  14. ^ Guidez, F; Ivins S; et al. (1998). „Reduced retinoic acid-sensitivities of nuclear receptor corepressor binding to PML- and PLZF-RARalpha underlie molecular pathogenesis and treatment of acute promyelocytic leukemia”. Blood. UNITED STATES. 91 (8): 2634—42. ISSN 0006-4971. PMID 9531570. 
  15. ^ Liu, R; Takayama S; et al. (1998). „Interaction of BAG-1 with retinoic acid receptor and its inhibition of retinoic acid-induced apoptosis in cancer cells”. J. Biol. Chem. UNITED STATES. 273 (27): 16985—92. ISSN 0021-9258. PMID 9642262. 
  16. ^ Dong, Shuo; Tweardy David J (2002). „Interactions of STAT5b-RARalpha, a novel acute promyelocytic leukemia fusion protein, with retinoic acid receptor and STAT3 signaling pathways”. Blood. United States. 99 (8): 2637—46. ISSN 0006-4971. PMID 11929748. 
  17. ^ Hong, S H; David G; et al. (1997). „SMRT corepressor interacts with PLZF and with the PML-retinoic acid receptor alpha (RARalpha) and PLZF-RARalpha oncoproteins associated with acute promyelocytic leukemia”. Proc. Natl. Acad. Sci. U.S.A. UNITED STATES. 94 (17): 9028—33. ISSN 0027-8424. PMID 9256429. 
  18. ^ Hu, Xinli; Chen Yixin; et al. (2004). „Suppressive effect of receptor-interacting protein 140 on coregulator binding to retinoic acid receptor complexes, histone-modifying enzyme activity, and gene activation”. J. Biol. Chem. United States. 279 (1): 319—25. ISSN 0021-9258. PMID 14581481. doi:10.1074/jbc.M307621200. 
  19. ^ Farooqui, Mariya; Franco Peter J; et al. (2003). „Effects of retinoid ligands on RIP140: molecular interaction with retinoid receptors and biological activity”. Biochemistry. United States. 42 (4): 971—9. ISSN 0006-2960. PMID 12549917. doi:10.1021/bi020497k. 
  20. ^ L'Horset, F; Dauvois S; et al. (1996). „RIP-140 interacts with multiple nuclear receptors by means of two distinct sites”. Mol. Cell. Biol. UNITED STATES. 16 (11): 6029—36. ISSN 0270-7306. PMID 8887632. 
  21. ^ Zhong, S; Delva L; et al. (1999). „A RA-dependent, tumour-growth suppressive transcription complex is the target of the PML-RARalpha and T18 oncoproteins”. Nat. Genet. UNITED STATES. 23 (3): 287—95. ISSN 1061-4036. PMID 10610177. doi:10.1038/15463. 
  22. ^ Benkoussa, Madjid; Brand Céline; et al. (2002). „Retinoic acid receptors inhibit AP1 activation by regulating extracellular signal-regulated kinase and CBP recruitment to an AP1-responsive promoter”. Mol. Cell. Biol. United States. 22 (13): 4522—34. ISSN 0270-7306. PMID 12052862. 
  23. ^ Bugge, T H; Pohl J; et al. (1992). „RXR alpha, a promiscuous partner of retinoic acid and thyroid hormone receptors”. EMBO J. ENGLAND. 11 (4): 1409—18. ISSN 0261-4189. PMID 1314167. 
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PDB Galerija
  • 1dkf​: Kristalna struktura heterodimerskog kompleksa RAR i RXR ligand-vezujućeg domena
    1dkf: Kristalna struktura heterodimerskog kompleksa RAR i RXR ligand-vezujućeg domena
  • 1dsz​: Struktura RXR/RAR DNK-vezujućeg domena hetorodimera u kompleksu sa DR1 odzivnim elementom retinoinske kiseline
    1dsz: Struktura RXR/RAR DNK-vezujućeg domena hetorodimera u kompleksu sa DR1 odzivnim elementom retinoinske kiseline
  • 1hra​: Rešenje strukture ljudskog vezujućeg domena retinoinskog receptora beta
    1hra: Rešenje strukture ljudskog vezujućeg domena retinoinskog receptora beta
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(1) Osnovni domeni
(1.1) Osnovni leucinski zatvarač (bZIP)
Aktivirajući transkripcioni faktor (AATF, 1, 2, 3, 4, 5, 6, 7) • AP-1 (c-Fos, FOSB, FOSL1, FOSL2, c-Jun, JUNB, JUND) • BACH (1, 2) • BATF • BLZF1 • C/EBP (α, β, γ, δ, ε, ζ) • CREB (1, 3, L1) • CREM • DBP • DDIT3 • GABPA • HLF • MAF (B, F, G, K) • NFE (2, L1, L2) • NFIL3 • NRL • NRF1 • XBP1
(1.2) Osnovni heliks-petlja-heliks (bHLH)
ATOH1 • AhR • AHRR • ARNT • ASCL1 • BHLHB2 • BMAL (ARNTL, ARNTL2) • CLOCK • EPAS1 • HAND (1, 2) • HES (5, 6) • HEY (1, 2, L) • HES1 • HIF (1A, 3A) • ID (1, 2, 3, 4) • LYL1 • MXD4 • MYCL1 • MYCN • Myogenic regulatorni faktori (MyoD, Myogenin, MYF5, MYF6) • Neurogenini (1, 2, 3) • NeuroD (1, 2) • NPAS (1, 2, 3) • OLIG (1, 2) • Pho4 • Scleraxis • TAL (1, 2) • Twist • USF1
(1.3) bHLH-ZIP
AP-4 • MAX • MITF • MNT • MLX • MXI1 • Myc • SREBP (1, 2)
(1.4) NF-1
NFI (A, B, C, X) • SMAD (R-SMAD (1, 2, 3, 5, 9) - I-SMAD (6, 7) - 4)
(1.5) RF-X
RFX (1, 2, 3, 4, 5, ANK)
(1.6) Osnovni heliks-razmak-heliks (bHSH)
AP-2 (α, β, γ, δ, ε)
(2) DNA-vezujući domeni cinkovog prsta
(2.1) Nuklearni receptor (Cys4)
potfamilija 1 (Tiroidni hormon (α, β), CAR, FXR, LXR (α, β), PPAR (α, β/δ, γ), PXR, RAR (α, β, γ), ROR (α, β, γ), Rev-ErbA (α, β), VDR)
potfamilija 2 (COUP-TF (I, II), Ear-2, HNF4 (α, γ), PNR, RXR (α, β, γ), Testikularni receptor (2, 4), TLX)
potfamilija 3 (Steroidni hormon (Androgen, Estrogen (α, β), Glukokortikoid, Mineralokortikoid, Progesteron), Estrogen-vezani (α, β, γ))
potfamilija 4 NUR (NGFIB, NOR1, NURR1) • potfamilija 5 (LRH-1, SF1) • potfamilija 6 (GCNF) • potfamilija 0 (DAX1, SHP)
(2.2) Drugi Cys4
GATA (1, 2, 3, 4, 5, 6) • MTA (1, 2, 3) • TRPS1
(2.3) Cys2His2
Generalni transkripcioni faktori (TFIIA, TFIIB, TFIID, TFIIE, TFIIF (1, 2), TFIIH (1, 2, 4, 2I, 3A, 3C1, 3C2))
ATBF1 • BCL (6, 11A, 11B) • CTCF • E4F1 • EGR (2, 3) • ERV3 • GFI1 • GLI-Kruppel familija (1, 2, 3, REST, S2, YY1) • HIC (1, 2) • HIVEP (1, 2, 3) • IKZF (1, 2, 3) • ILF (2, 3) • KLF (2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 17) • MTF1 • MYT1 • OSR1 • SP (1, 2, 4, 7) • WT1 • Zbtb7 (7A, 7B) • ZBTB (16, 17, 20, 32, 33, 40) • cink prst (3, 7, 9, 10, 19, 22, 24, 33B, 34, 35, 41, 43, 44, 51, 74, 143, 146, 148, 165, 202, 217, 219, 238, 239, 259, 267, 268, 281, 295, 318, 330, 346, 350, 365, 366, 384, 423, 451, 452, 471, 593, 638, 649, 655)
(2.4) Cys6
HIVEP1
(2.5) Naizmenična kompozicija
AIRE • DIDO1 • GRLF1 • ING (1, 2, 4) • JARID (1A, 1B, 1C, 1D, 2) • JMJD1B
(3.1) Homeodomen
ARX • CDX (1, 2) • CRX • CUTL1 • DBX (1, 2)  • DLX (3, 4, 5) • EMX2 • EN (1, 2) • FHL (1, 2, 3) • HESX1 • HHEX • HLX • Homeobox (A1, A2, A3, A4, A5, A7, A9, A10, A11, A13, B1, B2, B3, B4, B5, B6, B7, B8, B9, B13, C4, C5, C6, C8, C9, C10, C11, C13, D1, D3, D4, D8, D9, D10, D11, D12, D13) • HOPX • IRX (1, 2, 3, 4, 5, 6, MKX) • LMX (1A, 1B) • MEIS (1, 2) • MEOX2 • MNX1 • MSX (1, 2) • NANOG • NKX (2-1, 2-2, 2-3, 2-5, 3-1, 3-2, 6-1, 6-2) • PBX (1, 2, 3) • PHF (1, 3, 6, 8, 10, 16, 17, 20, 21A) • PITX (1, 2, 3) • POU domen (PIT-1, BRN-3: A, B, C, Oktamer transkripcioni faktor: 1, 2, 3/4, 6, 7, 11) • OTX (1, 2) • PDX1 • ZEB (1, 2)
(3.2) Paired box
PAX (1, 2, 3, 4, 5, 6, 7, 8, 9)
(3.3) Fork glava / winged heliks
E2F (1, 2, 3, 4, 5) • FOX proteini (C1, C2, D3, E1, G1, H1, K2, L2, M1, N3, O1, O3, O4, P1, P2, P3)
(3.4) Faktori toplotnog šoka
HSF (1, 2, 4)
(3.5) Triptofan klasteri
ELF (2, 4, 5) • EGF • ELK (1, 3, 4) • ERF • ERG • ETS (1, 2, SPIB) • ETV (1, 4, 5, 6) • FLI1 • Interferon regulatorni faktori (1, 2, 3, 4, 5, 6, 7, 8) • MYB • MYBL2
(3.6) TEA domen
transkripcioni pojačivač faktor (1, 2, 3, 4)
(4) β-Scaffold faktori sa manjim žljebnim kontaktima
(4.1) Rel homologni region
NF-κB (NFKB1, NFKB2, REL, RELA, RELB) • NFAT (C1, C2, C3, C4, 5)
(4.2) STAT
STAT (1, 2, 3, 4, 5, 6)
(4.3) p53
p53 • TBX (1, 2, 3, 5, 19, 21, 22, Brahiuri, TBR1)
(4.4) MADS kutija
Mef2 (A, B, C, D) • SRF
(4.6) TATA vezujući proteini
TBP • TBPL1
(4.7) Grupa visoke pokretljivosti
HMGB (1, 2, 3) • HNF (1A, 1B) • LEF1 • SOX (1, 2, 3, 4, 5, 6, 8, 9, 10, 11, 12, 13, 14, 15, 18, 21) • SRY • SSRP1 • TCF (3, 4) • TOX (1, 2, 3, 4)
(4.10) Domen hladnog šoka
CSDA, YBX1
(4.11) Runt
CBF (CBFA2T2, CBFA2T3, RUNX1, RUNX2, RUNX3, RUNX1T1)
(0) Drugi transkripcioni faktori
(0.2) HMGI(Y)
HMGA (1, 2) • HBP1
(0.3) Džep domen
Rb • RBL1 • RBL2
(0.5) AP-2/EREBP-vezani faktori
Apetala 2 • EREBP • B3
(0.6) Razno
ARID (1A, 1B, 2, 3A, 3B, 4A) • CAP • IFI (16, 35) • MLL (2, 3, T1) • MNDA • NFY (A, B, C) • Ro/Sigma
vidi isto transkripcioni faktor/koregulator nedostataka
B bsyn: dnk (repl, cycl, reco, repr) · tscr (fact, tcrg, nucl, rnat, rept, ptts) · tltn (risu, pttl, nexn) · dnab, rnab/runp · stru (domn, 1°, 2°, 3°, 4°)